RADseq_Ceratonia_siliqua - SRA

SRX13593460: RADseq_Ceratonia_siliqua
1 ILLUMINA (NextSeq 500) run: 3.1M spots, 212.1M bases, 84.9Mb downloads

Design: ddRADseq, EcoRI and MseI, fragment selection between 500 and 600 pb, single end sequencing 1x75bp

Submitted by: Aix Marseille University

Study: Ceratonia siliqua RADseq phylogeography

PRJNA793764 • SRP353386 • All experiments • All runs

RADseq genotypes of the carob tree sampled in the Mediterranean to obtain genomic based phylogeography. A preprint of the results is available here : Baumel A, et al. Genome-wide footprints in the carob tree (Ceratonia siliqua) unveil a new domestication pattern of fruit trees in the Mediterranean. Authorea. 2021. DOI: 10.22541/au.163344873.38613513/v1Filtered files and scripts of analyses are available here : https://osf.io/btrwn/More on the general project: https://dynamic.cirad.fr/

Sample:

SAMN24583171 • SRS11483283 • All experiments • All runs

Organism: Ceratonia siliqua

Library:

Name: MAPAR01-19_R1

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: Reduced Representation

Layout: SINGLE

Runs: 1 run, 3.1M spots, 212.1M bases, 84.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR17421782	3,061,825	212.1M	84.9Mb	2022-01-04

ID:: 18884303

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